PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_6931AA68B.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 73aa    MW: 8075.39 Da    PI: 10.4494
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_6931AA68B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind54.92.4e-172441860
                           TSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
           HSF_DNA-bind 18 liswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                           +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+Y
  Traes_7AL_6931AA68B.1  2 VIGWGKGNNSFVVADPFVFSQTMLPAHFKHNNFSSFVRQLNTY 44
                           799***************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-4171IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-17245IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-14244IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-13244IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-52436IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-53749IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
GVIGWGKGNN SFVVADPFVF SQTMLPAHFK HNNFSSFVRQ LNTYVSPLIP IYTSTPFVLS  60
ISVLLGRLRS CLS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2346535e-63KF234653.1 Triticum aestivum heat shock factor C2a (HsfC2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438552.16e-26hypothetical protein SORBIDRAFT_10g021800
RefseqXP_006657051.15e-26PREDICTED: heat stress transcription factor C-2b-like
RefseqXP_015641665.15e-26PREDICTED: heat stress transcription factor C-2b
SwissprotQ0DBL66e-28HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLW5H8J64e-47W5H8J6_WHEAT; Uncharacterized protein
STRINGMLOC_73300.13e-26(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-19heat shock transcription factor C1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]